Ahlgren, NA & Rocap, G 2006. Culture isolation and culture-independent clone libraries reveal new marine
Synechococcus ecotypes with distinctive light and N physiologies. Appl Environ Microbiol. 72:7193–7204.
Ahlgren, NA & Rocap, G 2012. Diversity and distribution of marine
Synechococcus: multiple gene phylogenies for consensus classification and development of qPCR assays for sensitive measurement of clades in the ocean. Front Microbiol. 3:213 pp.
Choi, DH 2012. Picocyanobacterial diversity and distribution during summer in the northern East China Sea. Ocean Polar Res. 34:19–28, (In Korean).
Choi, DH, An, SM, Choi, YR, Roh, HS & Noh, JH 2015a. Seasonal variation of picocyanobacterial community composition in seawaters around Dokdo, Korea. The Sea, J Korean Soc Oceanogr. 20:192–198, (In Korean).
Choi, DH & Noh, JH 2009. Phylogenetic diversity of
Synechococcus strains isolated from the East China Sea and the East Sea. FEMS Microbiol Ecol. 69:439–448.
Choi, DH, Noh, JH & Lee, J-H 2014. Application of pyrosequencing method for investigating the diversity of
Synechococcus subcluster 5.1 in open ocean. Microbes Environ. 29:17–22.
Choi, DH, Noh, JH & Shim, J 2013. Seasonal changes in picocyanobacterial diversity as revealed by pyrosequencing in temperate waters of the East China Sea and the East Sea. Aquat Microb Ecol. 71:75–90.
Choi, DH, Park, K-T, An, SM, Lee, K, Cho, J-C, Lee, J-H, Kim, D, Jeon, D & Noh, JH 2015b. Pyrosequencing revealed SAR116 clade as dominant
dddP-containing bacteria in oligotrophic NW Pacific Ocean. PLoS One. 10:e0116271 pp.
Choi, DH, Selph, KE & Noh, JH 2015c. Niche partitioning of picocyanobacterial lineages in the oligotrophic northwestern Pacific Ocean. Algae. 30:223–232.
Choi, JK, Noh, JH, Orlova, T, Park, M-O, Lee, SH, Park, Y-J, Son, S, Stonik, I & Choi, DH 2016. Phytoplankton and primary production. In : Chang K-I, Zhang C-I, Park C, Kang D-J, Ju S-J, Lee S-H, Wimbush M, editors
Oceanography of the East Sea (Japan Sea). Springer International Publishing, Cham, 217–246.
Dufresne, A, Ostrowski, M, Scanlan, DJ, Garczarek, L, Mazard, S, Palenik, BP, Paulsen, IT, de Marsac, NT, Wincker, P, Dossat, C, Ferriera, S, Johnson, J, Post, AF, Hess, WR & Partensky, F 2008. Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria. Genome Biol. 9:R90 pp.
Farrant, GK, Doré, H, Cornejo-Castillo, FM, Partensky, F, Ratin, M, Ostrowski, M, Pitt, FD, Wincker, P, Scanlan, DJ, Iudicone, D, Acinas, SG & Garczarek, L 2016. Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria. Proc Natl Acad Sci U S A. 113:E3365–E3374.
Fuller, NJ, Marie, D, Partensky, F, Vaulot, D, Post, AF & Scanlan, DJ 2003. Clade-specific 16S ribosomal DNA oligonucleotides reveal the predominance of a single marine
Synechococcus clade throughout a stratified water column in the Red Sea. Appl Environ Microbiol. 69:2430–2443.
Haverkamp, T, Acinas, SG, Doeleman, M, Stomp, M, Huisman, J & Stal, LJ 2008. Diversity and phylogeny of Baltic Sea picocyanobacteria inferred from their ITS and phycobiliprotein operons. Environ Microbiol. 10:174–188.
Huang, S, Wilhelm, SW, Harvey, HR, Taylor, K, Jiao, N & Chen, F 2012. Novel lineages of
Prochlorococcus and
Synechococcus in the global oceans. ISME J. 6:285–297.
Johnson, ZI, Zinser, ER, Coe, A, McNulty, NP, Woodward, EMS & Chisholm, SW 2006. Niche partitioning among
Prochlorococcus ecotypes along ocean-scale environmental gradients. Science. 311:1737–1740.
Kim, K-R, Lee, SH, Park, K-A, Park, JJ, Suh, Y-S, Lee, D-K, Kang, D-J & Chang, K-I 2016. General Introduction. In : Chang K-I, Zhang C-I, Park C, Kang D-J, Ju S-J, Lee S-H, Wimbush M, editors
Oceanography of the East Sea (Japan Sea). Springer International Publishing, Cham, 1–32.
Lavin, P, Gomez, P, González, B & Ulloa, O 2008. Diversity of the marine picocyanobacteria
Prochlorococcus and
Synechococcus assessed by terminal restriction fragment length polymorphisms of 16S–23S rRNA internal transcribed spacer sequences. Rev Chil Hist Nat. 81:515–531.
Lavin, P, González, B, Santibáñez, JF, Scanlan, DJ & Ulloa, O 2010. Novel lineages of
Prochlorococcus thrive within the oxygen minimum zone of the eastern tropical South Pacific. Environ Microbiol Rep. 2:728–738.
Lee, D-K, Seung, YH, Kim, Y-B, Kim, YH, Shin, H-R, Shin, C-W & Chang, K-I 2016. Circulation. In : Chang K-I, Zhang C-I, Park C, Kang D-J, Ju S-J, Lee S-H, Wimbush M, editors
Oceanography of the East Sea (Japan Sea). Springer International Publishing, Cham, 87–126.
Li, WKW 1994. Primary production of prochlorophytes, cyanobacteria, and eukaryotic ultraphytoplankton: measurements from flow cytometric sorting. Limnol Oceanogr. 39:169–175.
Liu, H, Nolla, HA & Campbell, L 1997.
Prochlorococcus growth rate and contribution to primary production in the equatorial and subtropical North Pacific Ocean. Aquat Microb Ecol. 12:39–47.
Mazard, S, Ostrowski, M, Partensky, F & Scanlan, DJ 2012. Multi-locus sequence analysis, taxonomic resolution and biogeography of marine
Synechococcus. Environ Microbiol. 14:372–386.
Mühling, M, Fuller, NJ, Somerfield, PJ, Post, AF, Wilson, WH, Scanlan, DJ, Joint, I & Mann, NH 2006. High resolution genetic diversity studies of marine
Synechococcus isolates using
rpoC1-based restriction fragment length polymorphism. Aquat Microb Ecol. 45:263–275.
Olson, RJ, Shalapyonok, A & Sosik, HM 2003. An automated submersible flow cytometer for analyzing pico- and nanophytoplankton: FlowCytobot. Deep Sea Res Part I Oceanogr Res Pap. 50:301–315.
Paerl, RW, Foster, RA, Jenkins, BD, Montoya, JP & Zehr, JP 2008. Phylogenetic diversity of cyanobacterial
narB genes from various marine habitats. Environ Microbiol. 10:3377–3387.
Parsons, TR, Maita, Y & Lalli, CM 1984. A manual of chemical and biological methods for seawater analysis. Amsterdam, Pergamon, 188 pp.
Rocap, G, Distel, DL, Waterbury, JB & Chisholm, SW 2002. Resolution of
Prochlorococcus and
Synechococcus ecotypes using 16S–23S ribosomal DNA internal transcribed spacer sequences. Appl Environmen Microbiol. 68:1180–1191.
Schloss, PD, Westcott, SL, Ryabin, T, Hall, JR, Hartmann, M, Hollister, EB, Lesniewski, RA, Oakley, BB, Parks, DH, Robinson, CJ, Sahl, JW, Stres, B, Thallinger, GG, Van Horn, DJ & Weber, CF 2009. Introducing Mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environmen Microbiol. 75:7537–7541.
Sohm, JA, Ahlgren, NA, Thomson, ZJ, Williams, C, Moffett, JW, Saito, MA, Webb, EA & Rocap, G 2016. Co-occurring
Synechococcus ecotypes occupy four major oceanic regimes defined by temperature, macronutrients and iron. ISME J. 10:333–345.
Stamatakis, A 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics. 22:2688–2690.
Tai, V, Burton, RS & Palenik, B 2011. Temporal and spatial distributions of marine
Synechococcus in the Southern California Bight assessed by hybridization to bead-arrays. Mar Ecol Prog Ser. 426:133–147.
Tai, V & Palenik, B 2009. Temporal variation of
Synechococcus clades at a coastal Pacific Ocean monitoring site. ISME J. 3:903–915.
Toledo, G & Palenik, B 1997.
Synechococcus diversity in the California Current as seen by RNA polymerase (
rpoC1) gene sequences of isolated strains. Appl Environ Microbiol. 63:4298–4303.
West, NJ, Lebaron, P, Strutton, PG & Suzuki, MT 2011. A novel clade of
Prochlorococcus found in high nutrient low chlorophyll waters in the South and Equatorial Pacific Ocean. ISME J. 5:933–944.
West, NJ & Scanlan, DJ 1999. Niche-partitioning of
Prochlorococcus populations in a stratified water column in the eastern North Atlantic Ocean. Appl Environ Microbiol. 65:2585–2591.
Yue, JC & Clayton, MK 2005. A similarity measure based on species proportions. Commun Stat Theory Methods. 34:2123–2131.
Zwirglmaier, K, Heywood, JL, Chamberlain, K, Woodward, EMS, Zubkov, MV & Scanlan, DJ 2007. Basin-scale distribution patterns of picocyanobacterial lineages in the Atlantic Ocean. Environ Microbiol. 9:1278–1290.
Zwirglmaier, K, Jardillier, L, Ostrowski, M, Mazard, S, Garczarek, L, Vaulot, D, Not, F, Massana, R, Ulloa, O & Scanlan, DJ 2008. Global phylogeography of marine
Synechococcus and
Prochlorococcus reveals a distinct partitioning of lineages among oceanic biomes. Environ Microbiol. 10:147–161.