The Phylogenetic Relationships of the Shags and Cormorants: Can Sequence Data Resolve a Disagreement between Behavior and Morphology?
Molecular Phylogenetics and Evolution. 2000;17(3):345-359 
Multi-gene phylogenies indicate ascomal wall morphology is a better predictor of phylogenetic relationships than ascospore morphology in the Sordariales (Ascomycota, Fungi)
Molecular Phylogenetics and Evolution. 2005;35(1):60-75
Split networks. A tool for exploring complex evolutionary relationships in molecular data
The Phylogenetic Handbook. 2009;631-653
Phylogenetic relationships of Nembrothinae (Mollusca: Doridacea: Polyceridae) inferred from morphology and mitochondrial DNA
Molecular Phylogenetics and Evolution. 2007;43(3):726-742
Phylogenetic relationships of the carabid subfamily Harpalinae (Coleoptera) based on molecular sequence data
Molecular Phylogenetics and Evolution. 2002;24(2):228-248
Additional gene data and increased sampling give new insights into the phylogenetic relationships of Neogastropoda, within the caenogastropod phylogenetic framework
Molecular Phylogenetics and Evolution. 2011;61(2):425-435
Mitochondrial DNA, morphology, and the phylogenetic relationships of Antarctic icefishes (Notothenioidei: Channichthyidae)
Molecular Phylogenetics and Evolution. 2003;28(1):87-98
Phylogenetic relationships of Middle American cichlids (Cichlidae, Heroini) based on combined evidence from nuclear genes, mtDNA, and morphology
Molecular Phylogenetics and Evolution. 2008;49(3):941-957
On the head morphology of Phyllium and the phylogenetic relationships of Phasmatodea (Insecta)
Acta Zoologica. 2011;93(2):184-199
Phylogenetic relationships of Iberian Aphodiini (Coleoptera: Scarabaeidae) based on morphological and molecular data
Molecular Phylogenetics and Evolution. 2004;31(3):1084-1100